Merge pull request #190 from COMBINE-lab/dev

Add Flex GEX support, release tooling, and docs updates

Author: rob-p

.github/workflows/test_simpleaf.yml

@@ -14,7 +14,7 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip ci')"
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-13]
+        os: [ubuntu-latest, macos-15]
     runs-on: ${{ matrix.os }}
     steps:
       - name: Checkout repository
@@ -27,9 +27,6 @@ jobs:
           override: true
           components: rustfmt
 
-      - name: Check format
-        run: cargo fmt -- --check
-
       - name: Build
         run: cargo build --verbose --release
 

.gitignore

@@ -22,6 +22,10 @@ TEST_REF
 TEST_REF_CLAPV4
 TEST_REF_ROERS
 blarg
+gencode_v49_simpleaf/
+pbmc_1k_v3_test_quant/
+pbmc_1k_v3_test_quant_new/
+scripts/download_accessions_rush.sh
 
 # macOS Finder metadata
 **/.DS_Store