TSCANorder parameter mismatch in infer_tree_structure function

[yu-tong-wang]

When using the infer_tree_structure function, I encountered an error related to the TSCANorder function call. The error suggests a mismatch between the parameters being passed and the actual function signature.

Error Message

Error in TSCANorder(mcl, startcluster = origin.cluster, listbranch = TRUE) : 
  unused argument (startcluster = origin.cluster)

This might be related to the TSCAN package code update (https://github.com/LTLA/TSCAN/blob/26abecf4bbc2785effddbb1db27c856fd236aac3/R/TSCANorder.R), where

TSCANorder <- function(mclustobj,MSTorder = NULL,orderonly=T,flip=F,listbranch=F) {...}

[wisdomadingo]

True, infer_tree_structure used to work just last year December but got the same error after updating today. Which is a bit strange because I dont see any recent commits in Lamian nor TSCAN repo.

[wisdomadingo]

I have also observed that, I get the error when I run line by line but it seems to work when I knit the Rmarkdown document