Spades Installation Test Error

[tanishatamara]

Hello,

I am new to bioinformatics and am attempting to use spades. I've installed spades but am getting an error when running the installation test. I am running everything through conda and have rosetta enabled on my terminal. I'm not sure if it's a computer issue or an issue with my installation. I have a 2020 M1 Mac running Monterey. I've tried uninstalling and reinstalling packages and the same error is occurring.

Command line: /Users/tanishateelucksingh/miniconda3/bin/spades.py --test

System information:
SPAdes version: 3.15.2
Python version: 3.10.8
OS: macOS-12.2.1-x86_64-i386-64bit

Output dir: /Users/tanishateelucksingh/spades_test
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
Standard mode
For multi-cell/isolate data we recommend to use '--isolate' option; for single-cell MDA data use '--sc'; for metagenomic data use '--meta'; for RNA-Seq use '--rna'.
Reads:
Traceback (most recent call last):
File "/Users/tanishateelucksingh/miniconda3/bin/spades.py", line 651, in
main(sys.argv)
File "/Users/tanishateelucksingh/miniconda3/bin/spades.py", line 591, in main
print_params(log, log_filename, command_line, args, cfg)
File "/Users/tanishateelucksingh/miniconda3/bin/spades.py", line 327, in print_params
print_used_values(cfg, log)
File "/Users/tanishateelucksingh/miniconda3/bin/spades.py", line 117, in print_used_values
dataset_data = pyyaml.load(open(cfg["dataset"].yaml_filename))
File "/Users/tanishateelucksingh/miniconda3/share/spades/pyyaml3/init.py", line 72, in load
return loader.get_single_data()
File "/Users/tanishateelucksingh/miniconda3/share/spades/pyyaml3/constructor.py", line 37, in get_single_data
return self.construct_document(node)
File "/Users/tanishateelucksingh/miniconda3/share/spades/pyyaml3/constructor.py", line 46, in construct_document
for dummy in generator:
File "/Users/tanishateelucksingh/miniconda3/share/spades/pyyaml3/constructor.py", line 398, in construct_yaml_map
value = self.construct_mapping(node)
File "/Users/tanishateelucksingh/miniconda3/share/spades/pyyaml3/constructor.py", line 204, in construct_mapping
return super().construct_mapping(node, deep=deep)
File "/Users/tanishateelucksingh/miniconda3/share/spades/pyyaml3/constructor.py", line 126, in construct_mapping
if not isinstance(key, collections.Hashable):
AttributeError: module 'collections' has no attribute 'Hashable'

[asl]

Please use the latest SPAdes 3.15.5

[tanishatamara]

Okay thank you, I will do that