scaffolds.fasta deleted, can I regenerate it from SPAdes outputs?

[jamesck2]

As the title suggests, I have accidentally deleted the scaffolds.fasta output for several assemblies. Fortunately, all other outputs from SPAdes are untouched. Is there a way I can regenerate the final scaffolds.fasta file from the existing outputs without re-running SPAdes in its entirety?

[asl]

If output is your output directory and 127 is the last k-mer length, then check for output/K127/scaffolds.fasta file.

[jamesck2]

Oh great! The K127 scaffolds are the same as the final scaffolds? If so that would solve my problem.

[asl]

Yes

[jamesck2]

Perfect, thank you for the help