scenicplus_core/pyproject.toml at main · aertslab/scenicplus_core · GitHub

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[build-system]
requires = ["maturin>=1.0,<2.0"]
build-backend = "maturin"

[tool.maturin]
# "extension-module" tells pyo3 we want to build an extension module (skips linking against libpython.so)
features = ["pyo3/extension-module"]
python-source = "python"

[project]
name = "scenicplus_core"
authors = [
  { name = "Gert Hulselmans", email = "gert.hulselmans@kuleuven.be" },
]
description = "Collection of common algorithms and functions for all SCENIC+ related tools."
0readme = "README.md"
requires-python = ">=3.8"
keywords = ["SCENIC+ core"]
# license = { file = "LICENSE.txt" }
classifiers = [
  "Development Status :: 3 - Alpha",
  "Environment :: Console",
  "Intended Audience :: Science/Research",
  "License :: Other/Proprietary License",
  "Operating System :: OS Independent",
  "Programming Language :: Python",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3 :: Only",
  "Programming Language :: Python :: 3.8",
  "Programming Language :: Python :: 3.9",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Rust",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dynamic = ["version"]
dependencies = [
  "numpy >= 1.16.0",
]

[project.urls]
Homepage = "https://github.com/aertslab/scenicplus_core"
Documentation = "https://scenicplus_core.readthedocs.io/"
Repository = "https://github.com/aertslab/scenicplus_core"
Changelog = "https://github.com/aertslab/scenicplus_core/releases"

[tool.ruff]
target-version = "py38"
line-length = 88
# fix = true

lint.select = [
  "E", # pycodestyle
  "W", # pycodestyle
  "F", # Pyflakes
  "B", # flake8-bugbear
  "C4", # flake8-comprehensions
  "D", # flake8-docstrings
  "I", # isort
  "SIM", # flake8-simplify
  "TCH", # flake8-type-checking
  "TID", # flake8-tidy-imports
  "Q", # flake8-quotes
  "UP", # pyupgrade
  "PT", # flake8-pytest-style
  "RUF", # Ruff-specific rules
]

lint.ignore = [
  # Line length regulated by black
  "E501",
  # pydocstyle: http://www.pydocstyle.org/en/stable/error_codes.html
  # numpy convention with a few additional lints
  "D107",
  "D203",
  "D212",
  "D401",
  "D402",
  "D415",
  "D416",
  # flake8-pytest-style:
  "PT011", # pytest.raises({exception}) is too broad, set the match parameter or use a more specific exception
  # flake8-simplify
  "SIM102", # Use a single `if` statement instead of nested `if` statements
  # ruff
  "RUF005", # unpack-instead-of-concatenating-to-collection-literal
  # pycodestyle
  # TODO: Remove errors below to further improve docstring linting
  # Ordered from most common to least common errors.
  "D105",
  "D100",
  "D103",
  "D102",
  "D104",
  "D101",
]

[tool.ruff.lint.pycodestyle]
max-doc-length = 88

[tool.ruff.lint.flake8-tidy-imports]
ban-relative-imports = "all"