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dcmclient 0.4.0 — the turnkey DICOM command-line client
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.github/workflows/docs.yml

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name: docs
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on:
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push:
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branches: [main]
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permissions:
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contents: read
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pages: write
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id-token: write
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jobs:
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build-deploy:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- run: pip install -r docs/requirements.txt
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- run: mkdocs build --strict
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- uses: actions/upload-pages-artifact@v3
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with:
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- uses: actions/deploy-pages@v4

.gitignore

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/site/
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.DS_Store

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LICENSE

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NOTICE

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dcmclient
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Copyright (c) 2026 Fuli Wu
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Licensed under the Apache License, Version 2.0 (see LICENSE).
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dcmclient's high-performance DICOM engine ships as a compiled binary; its
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source is maintained separately and is not included in this distribution. The
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Apache-2.0 grant covers the dcmclient binary as distributed.
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NOT A MEDICAL DEVICE. dcmclient is not a medical device and is not intended or
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cleared for clinical, diagnostic, or therapeutic use. Tool outputs are for research and engineering use only; you are solely
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responsible for validating any output for your intended use.
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THIRD-PARTY SOFTWARE. The binary statically links third-party open-source
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libraries (and links the host operating system's zlib/bzip2 dynamically); all
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are listed with their notices in THIRD-PARTY-LICENSES. FFmpeg is included under
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the GNU LGPL v2.1 (full text in LGPL-2.1.txt) with a §6 relink offer.
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TRADEMARKS. "FFmpeg" is a trademark of the FFmpeg project. "DICOM" is a
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registered trademark of the National Electrical Manufacturers Association
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(NEMA). These names are used only to describe interoperability; dcmclient is not
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affiliated with, sponsored by, or endorsed by the FFmpeg project or NEMA.

README.md

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# dcmclient
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**One static binary, 61 DICOM tools — first-class for people and for agents.** A
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complete command-line DICOM toolbox *and* a self-describing MCP/agent surface,
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from one tool registry. No SDK, no per-tool glue, no runtime dependencies. It
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opens **any DICOM, from any vendor or country****every transfer syntax**
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(incl. JPEG-XL / HTJ2K most toolchains can't read) and **every character set**
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(Japanese / Korean / Chinese multibyte, all ISO 2022) — where strict tools choke.
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```console
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# drive it yourself
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$ dcmclient dcmdump scan.dcm # inspect — one element per line
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$ dcmclient dcmconv --to jxl ct.dcm out.dcm # transcode (incl. JPEG-XL / HTJ2K)
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$ dcmclient dcmvalidate scan.dcm # IOD conformance check
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$ dcmclient search https://pacs.example.com --patient-id 42 --json # query a PACS
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# …or hand it to an agent
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$ dcmclient mcp # serve every tool to an MCP client over stdio
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$ dcmclient manifest # per-tool inputSchema + outputSchema as JSON
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```
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> **Not a medical device.** Not intended or cleared for clinical or diagnostic
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> use — outputs are for research and engineering only.
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**[Quickstart](https://dcmkit.github.io/dcmclient/quickstart/)** ·
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**[Agent integration](https://dcmkit.github.io/dcmclient/agents/)** ·
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**[Tool reference](https://dcmkit.github.io/dcmclient/reference/)** (every flag of every tool)
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## A complete command-line toolbox
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61 tools covering the whole job — inspect, convert, author, extract, edit,
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de-identify, validate, and move studies over the network:
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```console
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# inspect — as text / JSON / XML / SR tree
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$ dcmclient dcmdump scan.dcm # one element per line
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$ dcmclient dcm2json scan.dcm > scan.json # DICOM JSON (PS3.18)
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$ dcmclient dcm2xml scan.dcm > scan.xml # Native DICOM XML (PS3.19)
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$ dcmclient dsrdump report.dcm # Structured Report content tree
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# convert & transcode — every codec built in (JPEG-2000 / JPEG-LS / RLE / JPEG-XL / HTJ2K)
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$ dcmclient dcmconv --to jxl ct.dcm out.dcm
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$ dcmclient dcm2nii ct_series/ ct.nii.gz # → NIfTI (--split = one per series)
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$ dcmclient dcm2nrrd ct_series/ ct.nrrd # → NRRD (3D Slicer)
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$ dcmclient dcm2mha ct_series/ ct.mha # → MetaImage (ITK / nnU-Net)
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$ dcmclient pdf2dcm report.pdf out.dcm # wrap a PDF as Encapsulated PDF
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# edit / de-identify / validate
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$ dcmclient dcmodify scan.dcm -i '(0010,0010)=Anon^Patient'
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$ dcmclient dcmdeident study/*.dcm --out-dir deid/ # PS3.15 Annex E
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$ dcmclient dcmvalidate scan.dcm # IOD conformance
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# networking — DICOMweb (search / pull / push) + DIMSE (echo / store / find / get / move)
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$ dcmclient pull https://pacs.example.com --study 1.2.3 -o ./out
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$ dcmclient store-scu PACS 11112 ./*.dcm --aec PACS
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$ dcmclient find-scu PACS 11112 -S -k QueryRetrieveLevel=SERIES --json
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```
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Prefer per-tool commands? One symlink gives each its own name — `ln -s dcmclient
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dcmdump` makes `dcmdump scan.dcm` work. Full list + every flag in the
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**[tool reference](https://dcmkit.github.io/dcmclient/reference/)**.
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## A self-describing agent surface
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Every tool is declared once in a single registry. That one declaration *is* the
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command-line parser, the `manifest` self-description, **and** the `mcp`
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`tools/list` reply — so the agent surface can never drift from what the binary
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actually does.
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- **`mcp`** — a live [Model Context Protocol](https://modelcontextprotocol.io)
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server over stdio; any MCP client (Claude Desktop, Claude Code, your own
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runtime) discovers and calls all 61 tools with zero per-tool wiring.
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- **`manifest`** — each tool's `inputSchema` + `outputSchema` as JSON, ready to
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drop into a function-calling tool definition. Filter by `readOnly` /
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`network` / `writesFiles` to expose only a safe subset.
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- **JSON envelope**`{tool, ok, exit_code, result, error}` on `--json`;
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`stdout` is machine output, `stderr` is human diagnostics; graduated exit
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codes separate bad input from runtime failure.
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## Install
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**Homebrew** (macOS & Linux) — the recommended path:
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```console
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$ brew install dcmkit/tap/dcmclient
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$ dcmclient --help
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```
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**Direct download** — grab the binary for your platform from the
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[releases page](https://github.com/dcmkit/dcmclient/releases) and put it on your
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`PATH` (macOS builds are Developer-ID signed & notarized):
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```console
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# macOS (arm64); swap the asset for your platform:
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# dcmclient-macos-arm64 · dcmclient-macos-x86_64
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# dcmclient-linux-aarch64 · dcmclient-linux-x86_64 (glibc 2.28+)
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$ curl -L -o dcmclient https://github.com/dcmkit/dcmclient/releases/latest/download/dcmclient-macos-arm64
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$ install -m 755 dcmclient /usr/local/bin/
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$ dcmclient --help
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```
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**Container** (sandboxed agents / CI) — the binary is the entrypoint:
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```console
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$ docker run --rm -i ghcr.io/dcmkit/dcmclient mcp # MCP server over stdio
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$ docker run --rm -v "$PWD:/work" ghcr.io/dcmkit/dcmclient dcm2json /work/scan.dcm
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```
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One symlink gives each tool its own name — `ln -s dcmclient dcmdump` makes
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`dcmdump scan.dcm` work, with no extra binary to ship.
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## Documentation
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Full docs — quickstart, agent integration, and the generated tool reference —
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at **[dcmkit.github.io/dcmclient](https://dcmkit.github.io/dcmclient/)**.
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## License
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**Apache-2.0** (see [LICENSE](LICENSE) / [NOTICE](NOTICE)). The DICOM engine
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ships as a compiled binary; third-party components linked into it are listed in
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[THIRD-PARTY-LICENSES](THIRD-PARTY-LICENSES) — all permissive except **FFmpeg**,
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which is included under **LGPL-2.1** with a §6 relink offer.

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