esbs-bioinformatics/_quarto.yml at main · dorinemerlat/esbs-bioinformatics · GitHub

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project:
  type: website
  output-dir: docs

website:
  title: "ESBS Bioinformatics"
  navbar:
    background: primary
    left:
    - text: "Home"
      href: index.qmd
    - text: "1A"
      menu:
      - text: "1 - Exploring sequence database"
        href: practicals-1A/practical1.qmd
      - text: "2 - Functional analysis of a gene list and sequence comparison"
        href: practicals-1A/practical2.qmd
      - text: "3 - Similary searches"
        href: practicals-1A/practical3.qmd
      - text: "4 - Analysis of Protein Families"
        href: practicals-1A/practical4.qmd
      - text: "5 - Multiple Alignment & Phylogeny"
        href: practicals-1A/practical5.qmd
    - text: "2A"
      menu:
      - text: "1 - Pre-processing of sequencing reads"
        href: practicals-2A/practical1.qmd
      - text: "2 - Read mapping on a reference genome"
        href: practicals-2A/practical2.qmd
      - text: "3 - De novo assembly"
        href: practicals-2A/practical3.qmd
      - text: "4 - Annotation of a complete prokaryotic genome"
        href: practicals-2A/practical4.qmd
      - text: "5 - Analysis of eukaryotic sequences"
        href: practicals-2A/practical5.qmd
    - text: "3A"
      menu:
      - text: "2 - Exome analysis"
        href: practicals-3A/practical2.qmd
      - text: "3 - Personal genomics: variants"
        href: practicals-3A/practical3.qmd
    - text: "Pharma"
      menu:
      - text: "1 - Pre-processing of sequencing reads"
        href: practicals-pharma/practical1.qmd
      - text: "2 - Exploring sequence database"
        href: practicals-pharma/practical2.qmd
      - text: "3 - Functional analysis of a gene list and sequence comparison"
        href: practicals-pharma/practical3.qmd
      - text: "4 - Similary searchese"
        href: practicals-pharma/practical4.qmd
      - text: "5 - Analysis of Protein Families"
        href: practicals-pharma/practical5.qmd
    - text: "Help"
      menu:
      - text: "Galaxy Help"
        href: help/galaxy.qmd
      - text: "Server Connection Guide"
        href: help/server_connection_guide.qmd
    tools:
    - icon: github
      menu:
        - text: Source Code
          href:  https://github.com/dorinemerlat/bioinformatics-en
        - text: Report a Bug
          href:  https://github.com/dorinemerlat/bioinformatics-en/issues
  search:
    location: navbar
    type: textbox
    keyboard-shortcut: ["?", "H"]
    copy-button: true
  page-footer: "Copyright 2024, Dorine Merlat. Built with Quarto."

language:
  search-box-placeholder: Search

format:
  html:
    theme:
      light: flatly
      dark: darkly
    toc: true
    include-after-body: custom.html