File tree Expand file tree Collapse file tree
Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -175,8 +175,12 @@ flexidot -i sSaTar.fas -m 2 -a alignments.blast6 -o blast_dotplot \
175175
176176Output:
177177
178+ <p align =" center " >
179+
178180<img src =" https://github.com/flexidot-bio/flexidot/blob/master/docs/images/blast_dotplot-Polydotplot.png?raw=true " width =" 400 " >
179181
182+ </p >
183+
180184When aligning sequences with ` nucmer ` the alignment ` .delta ` file can be
181185converted to ` PAF ` using ` paftools.js ` which comes bundled with ` Minimap2 ` .
182186
@@ -197,8 +201,12 @@ flexidot -i sSaTar.fas -m 2 -a self_align.paf -o nucmer_dotplot \
197201
198202Output:
199203
204+ <p align =" center " >
205+
200206<img src =" https://github.com/flexidot-bio/flexidot/blob/master/docs/images/nucmer_dotplot-Polydotplot.png?raw=true " width =" 400 " >
201207
208+ </p >
209+
202210## Plotting modes
203211
204212FlexiDot allows sequence investigation in three run modes via the option
You can’t perform that action at this time.
0 commit comments