thesis/Appendix3/appendix3.tex at main · franciscozorrilla/thesis · GitHub

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%!TEX root = ../thesis.tex
% ******************************* Thesis Appendix C ****************************
\chapter{\emph{C. difficile} suppression supplementary figures}

\ifpdf
    \graphicspath{{Appendix3/Figs/Raster/}{Appendix3/Figs/PDF/}{Appendix3/Figs/}}
\else
   \graphicspath{{Appendix3/Figs/Vector/}{Appendix3/Figs/}}
\fi

\begin{figure}[htbp!]
\centering
\includegraphics[width=1.0\textwidth]{sup_fig1.png}
\caption[PCA of Metabolon data for Mix14 members]{PCA plot of Mix14 members based on Metabolon data.}
\label{fig:sup_fig1.png}
\end{figure}


\begin{figure}[htbp!]
\centering
\includegraphics[width=1.0\textwidth]{sup_fig2.png}
\caption[Draft metabolic model reconstruction for Mix14 members]{Number of metabolites and reactions for Mix14 draft metabolic models generated by CarveMe.}
\label{fig:sup_fig2.png}
\end{figure}

\begin{figure}[htbp!]
\centering
\includegraphics[width=1.0\textwidth]{sup_fig3.png}
\caption[Flux balance analysis results for Mix14 members]{Flux balance analysis results for Mix14 members simulated in M3 media \cite{Tramontano2018}, faceted by import and export flux.}
\label{fig:sup_fig3.png}
\end{figure}

\begin{figure}[htbp!]
\centering
\includegraphics[width=1.0\textwidth]{sup_fig4.png}
\caption[Predicted minimal media composition for Mix14]{SMETANA-calculated minimal media composition across multiple simulations for Mix14 community.}
\label{fig:sup_fig4.png}
\end{figure}

\begin{figure}[htbp!]
\centering
\includegraphics[width=1.0\textwidth]{sup_fig5.png}
\caption[PCA of Mix14 metabolomics data showing samples]{PCA of Mix14 metabolomics data coloured by samples/individuals. Panel a shows principal components 1 and 2, while panel b shows principal components 3 and 4.}
\label{fig:sup_fig5.png}
\end{figure}

\begin{figure}[htbp!]
\centering
\includegraphics[width=1.0\textwidth]{sup_fig6.png}
\caption[PCA of Mix14 metabolomics data showing metabolites]{PCA of Mix14 metabolomics data coloured by metabolites/variables.}
\label{fig:sup_fig6.png}
\end{figure}