nf-core-modules/modules/nf-core/bakta/baktadbdownload/meta.yml at 99eb90ffa4025783471f3497ebb16ae310182d05 · jfy133/nf-core-modules · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
name: "bakta_baktadbdownload"
description: Downloads BAKTA database from Zenodo
keywords:
  - bakta
  - annotation
  - fasta
  - bacteria
  - database
  - download
tools:
  - bakta:
      description: Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
      homepage: https://github.com/oschwengers/bakta
      documentation: https://github.com/oschwengers/bakta
      tool_dev_url: https://github.com/oschwengers/bakta
      doi: "10.1099/mgen.0.000685"
      licence:
        - "GPL v3"
      identifier: biotools:bakta
input: []
output:
  db:
    - db*:
        type: directory
        description: BAKTA database directory
        pattern: "db*/"
  versions_bakta:
    - - ${task.process}:
          type: string
          description: The name of the process
      - bakta:
          type: string
          description: The name of the tool
      - bakta --version 2>&1 | sed 's/.*bakta //':
          type: eval
          description: The expression to obtain the version of the tool
topics:
  versions:
    - - ${task.process}:
          type: string
          description: The name of the process
      - bakta:
          type: string
          description: The name of the tool
      - bakta --version 2>&1 | sed 's/.*bakta //':
          type: eval
          description: The expression to obtain the version of the tool
authors:
  - "@jfy133"
  - "@jasmezz"
maintainers:
  - "@jfy133"
  - "@jasmezz"