Dear author,
When utilize spatialcellchat, I also met the problem
chat <- computeAvgCommunProb_Visium(
chat,
cell.type.decomposition = as.matrix(cell.type.decomposition_sub),
avg.type = 'avg',
nboot = 100,
do.permutation = T
)
The cell groups used for averaging cell-cell communication are b100
Error in computeAvgCommunProb_Visium(chat, cell.type.decomposition = as.matrix(cell.type.decomposition_sub), :
✖Please check your cell.type.decomposition's colnames, and make sure they are the same as the cell groups' names in the SpatialCellChat.
Dear author,
When utilize spatialcellchat, I also met the problem