refactor: flatten adapter timming log entries in report channel

maurya-anand · maurya-anand · commit ce1c2bc1df95 · 2026-05-07T15:21:43.000+02:00
diff --git a/main.nf b/main.nf
@@ -54,7 +54,7 @@ workflow {
     }
     report_in_ch = channel.empty()
     report_in_ch = report_in_ch.mix(trimmed_reads_ch.fastqc)
-    report_in_ch = report_in_ch.mix(trimmed_reads_ch.log.map { log_file -> log_file[0] })
+    report_in_ch = report_in_ch.mix(trimmed_reads_ch.log.flatten())
     report_in_ch = report_in_ch.mix(ac_in_ch.log.map { _meta, log_file -> log_file })
     report_in_ch = report_in_ch.mix(ac_in_ch.stats.map { _meta, log_file -> log_file })
     REPORT(report_in_ch.collect())

Original file line number	Diff line number	Diff line change
`@@ -54,7 +54,7 @@ workflow {`
`54`	`54`	`}`
`55`	`55`	`report_in_ch = channel.empty()`
`56`	`56`	`report_in_ch = report_in_ch.mix(trimmed_reads_ch.fastqc)`
`57`		`- report_in_ch = report_in_ch.mix(trimmed_reads_ch.log.map { log_file -> log_file[0] })`
	`57`	`+ report_in_ch = report_in_ch.mix(trimmed_reads_ch.log.flatten())`
`58`	`58`	`report_in_ch = report_in_ch.mix(ac_in_ch.log.map { _meta, log_file -> log_file })`
`59`	`59`	`report_in_ch = report_in_ch.mix(ac_in_ch.stats.map { _meta, log_file -> log_file })`
`60`	`60`	`REPORT(report_in_ch.collect())`