Phylogroup G prediction

[iaposto]

Hi! I was wondering if EzClermont can predict phylogroup G as per https://doi.org/10.1111/1462-2920.14713

Thanks!

[nickp60]

Hi @iaposto,
Yes, when run from the command line or docker . I need to ping to folks who host the webapp, as it looks like the deployment system broke and it is still serving an old version of the app prior to the publication/incorporation of the G phylogroup. let me know if you have any issues, sorry for the inconvenience! If its a hassle to run the CLI version and you are comfortable sharing the data, I'm happy to run it for you.

[iaposto]

Hi @nickp60,
Thanks for letting me know. I am actually interested for the CLI version, I need to run the tool for ~2000 assemblies. I can also confirm that the webapp is not predicting phylogroup G, I tested it with a positive strain yesterday.

Thanks again for your help!