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add VH nextseq machine type
1 parent 04bd2e6 commit a9d38a8

3 files changed

Lines changed: 9 additions & 1 deletion

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fcid/run.py

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@@ -15,6 +15,7 @@
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["E[0-9]{5}", [["HiSeq X"]]],
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["NB[0-9]{6}", [["NextSeq"]]],
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["NS[0-9]{6}", [["NextSeq"]]],
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["VH[0-9]{5}", [["NextSeq 2000"]]],
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["MN[0-9]{5}", [["MiniSeq"]]],
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["A[0-9]{5}", [["NovaSeq"]]],
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["NA[0-9]{5}", [["NovaSeq"]]],

fcid/test_fcid.py

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@@ -13,6 +13,13 @@ def test_by_machine(capsys):
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outerr = capsys.readouterr()
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assert outerr.out == "HiSeq 3000,HiSeq 4000\n"
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def test_by_machine_nextseq(capsys):
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testargs = ["fcid", "VH12345", "--by-machine"]
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with patch.object(sys, "argv", testargs):
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main()
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outerr = capsys.readouterr()
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assert outerr.out == "NextSeq 2000\n"
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def test_by_flowcell():
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print(get_tech_type("22C37GLT3", FCIDs))

pyproject.toml

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@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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[project]
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name = "fcid"
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version = "0.0.10"
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version = "0.0.11"
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authors = [
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{name = "Nick Waters", email = "nickp60@gmail.com"},
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]

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