DESCRIPTION

Package: decemedip
Title: hierarchical Bayesian modeling for cell type deconvolution of immunoprecipitation-based DNA methylome
Version: 0.99.1
Authors@R: 
    person("Keegan", "Korthauer", , "kkorthauer@cmmt.ubc.ca", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-4565-1654"))
Description: The R package decemedip is a novel computational paradigm developed
  for inferring the relative abundances of cell types and tissues measure by 
  methylated DNA immunoprecipitation sequencing (MeDIP-Seq). This paradigm 
  allows using reference data from other technologies such as microarray or WGBS.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: Software, ImmunoOncology, DNAMethylation, Epigenetics, Sequencing, 
  WholeGenome
Biarch: true
Depends: 
    R (>= 4.4.0)
Imports: 
    bayesplot,
    cowplot,
    dplyr,
    GenomicRanges,
    ggplot2,
    IRanges,
    magrittr,
    Matrix,
    matrixStats,
    MEDIPS,
    methods,
    purrr,
    R.utils,
    Rcpp (>= 0.12.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    rstantools (>= 2.4.0),
    S4Vectors,
    SummarizedExperiment
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle,
    devtools,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3