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    15 repositories

    • ninetails

      Public
      An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
      bioinformaticsrnanopore
      bioinformaticsrnanoporeneural-networktensorflowrna-sequencingpolyadoradoreticulatenanopore-sequencing
      R
      •
      Other
      •5•16•1•0•Updated Aug 10, 2026Aug 10, 2026

    • NanoQuRe

      Public
      R Package for Quality Control for Nanopore Sequencing
      markdownquality-controlr
      markdownquality-controlrnanoporereportingnanopore-sequencing
      R
      •
      Other
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • nanopolish_mRNA-1273_BNT162b2

      Public
      Nanopolish polya-moderna for the identification of terminal pentamer in the mRNA-1273 direct RNA sequencing data
      C++
      •
      MIT License
      •158•1•0•0•Updated Jul 22, 2025Jul 22, 2025

    • DTW_mRNA-1273

      Public
      Dynamic Time Warping functions used for the identification of mRNA-1273 reads in the nanopore DRS raw sequencing data
      Python
      •
      MIT License
      •2•1•0•0•Updated Jul 22, 2025Jul 22, 2025

    • nanotail

      Public
      R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
      R
      •
      GNU General Public License v3.0
      •4•1•0•0•Updated Mar 5, 2025Mar 5, 2025

    • rDNA_mine

      Public
      Tool for analyzing rDNA modules in Oxford Nanopore sequencing reads
      Shell
      •
      MIT License
      •1•3•0•0•Updated Jan 12, 2025Jan 12, 2025

    • dorado

      Public
      Oxford Nanopore's Basecaller
      C++
      •
      Other
      •126•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • ninetails_processing

      Public
      Scripts used during the development of Ninetails package
      R
      •
      MIT License
      •1•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • mRNA-1273_BNT162b2_test_data

      Public
      test data of mRNA-1273 and BNT162b2 direct RNA nanopore sequencing
      MIT License
      •0•1•0•0•Updated Apr 18, 2024Apr 18, 2024

    • wf-transcriptomes

      Public
      Python
      •
      Other
      •48•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • yeast_deadenylation_methods_chapter

      Public
      Transcriptome-wide analysis of mRNA adenylation status in yeast using nanopore sequencing - materials accompanying the methods chapter
      nanoporeprotocolrna
      nanoporeprotocolrnadirect-rna-sequencing
      TeX
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • nanopolish_BNT162b2

      Public
      Nanopolish polya-pfizer for the identification of terminal pentamer in the mRNA-1273 direct RNA sequencing data
      C++
      •
      MIT License
      •158•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • minion_qc

      Public
      Quality control for MinION sequencing data
      R
      •
      MIT License
      •43•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • FastQ-Screen

      Public
      Detecting contamination in NGS data and multi-species analysis
      HTML
      •
      GNU General Public License v3.0
      •24•0•0•0•Updated Nov 18, 2021Nov 18, 2021

    • SquiggleNet

      Public
      Python
      •
      MIT License
      •7•0•0•0•Updated Sep 27, 2021Sep 27, 2021
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