feat(PLAT-2723): Support creation of Seqera Compute environments

Author: tom-seqera

conf/reflect-config.json

@@ -471,6 +471,12 @@
   "queryAllDeclaredMethods":true,
   "methods":[{"name":"<init>","parameterTypes":[] }]
 },
+{
+  "name":"io.seqera.tower.cli.commands.computeenvs.add.AddSeqeraComputeCmd",
+  "allDeclaredFields":true,
+  "queryAllDeclaredMethods":true,
+  "methods":[{"name":"<init>","parameterTypes":[] }]
+},
 {
   "name":"io.seqera.tower.cli.commands.computeenvs.add.AddSlurmCmd",
   "allDeclaredFields":true,
@@ -666,6 +672,12 @@
   "allDeclaredFields":true,
   "queryAllDeclaredMethods":true
 },
+{
+  "name":"io.seqera.tower.cli.commands.computeenvs.platforms.SeqeraComputePlatform",
+  "allDeclaredFields":true,
+  "queryAllDeclaredMethods":true,
+  "methods":[{"name":"<init>","parameterTypes":[] }]
+},
 {
   "name":"io.seqera.tower.cli.commands.computeenvs.platforms.SlurmPlatform",
   "allDeclaredFields":true,

src/main/java/io/seqera/tower/cli/commands/computeenvs/AddCmd.java

@@ -29,6 +29,7 @@
 import io.seqera.tower.cli.commands.computeenvs.add.AddK8sCmd;
 import io.seqera.tower.cli.commands.computeenvs.add.AddLsfCmd;
 import io.seqera.tower.cli.commands.computeenvs.add.AddMoabCmd;
+import io.seqera.tower.cli.commands.computeenvs.add.AddSeqeraComputeCmd;
 import io.seqera.tower.cli.commands.computeenvs.add.AddSlurmCmd;
 import io.seqera.tower.cli.commands.computeenvs.add.AddUgeCmd;
 import io.seqera.tower.cli.exceptions.ShowUsageException;
@@ -53,6 +54,7 @@
                 AddGoogleLifeSciencesCmd.class,
                 AddGoogleBatchCmd.class,
                 AddAzureCmd.class,
+                AddSeqeraComputeCmd.class
         }
 )
 public class AddCmd extends AbstractComputeEnvCmd {

src/main/java/io/seqera/tower/cli/commands/computeenvs/add/AbstractAddCmd.java

@@ -128,6 +128,11 @@ protected ComputeEnvAdded addComputeEnvWithLabels(PlatformEnum platform, Compute
     }
 
     private String findWorkspaceCredentials(PlatformEnum type, Long wspId) throws ApiException {
+        if (type == PlatformEnum.SEQERACOMPUTE_PLATFORM) {
+            // seqera-compute handles credentials automatically
+            return null;
+        }
+
         List<Credentials> credentials = credentialsApi().listCredentials(wspId, type.getValue()).getCredentials();
         if (credentials.isEmpty()) {
             throw new TowerException("No valid credentials found at the workspace");

src/main/java/io/seqera/tower/cli/commands/computeenvs/add/AddSeqeraComputeCmd.java

@@ -0,0 +1,37 @@
+/*
+ * Copyright 2021-2023, Seqera.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *
+ */
+
+package io.seqera.tower.cli.commands.computeenvs.add;
+
+import io.seqera.tower.cli.commands.computeenvs.platforms.Platform;
+import io.seqera.tower.cli.commands.computeenvs.platforms.SeqeraComputePlatform;
+import picocli.CommandLine;
+
+@CommandLine.Command(
+        name = "seqera-compute",
+        description = "Add new Seqera Compute environment."
+)
+public class AddSeqeraComputeCmd extends AbstractAddCmd {
+
+    @CommandLine.Mixin
+    SeqeraComputePlatform platform;
+
+    @Override
+    protected Platform getPlatform() {
+        return platform;
+    }
+}

src/main/java/io/seqera/tower/cli/commands/computeenvs/platforms/AbstractPlatform.java

@@ -34,9 +34,6 @@
 
 public abstract class AbstractPlatform<T extends ComputeConfig> implements Platform {
 
-    @Option(names = {"--work-dir"}, description = "Work directory.", required = true)
-    public String workDir;
-
     @ArgGroup(heading = "%nStaging options:%n", validate = false)
     public StagingOptions staging;
 

src/main/java/io/seqera/tower/cli/commands/computeenvs/platforms/AltairPlatform.java

@@ -27,6 +27,9 @@
 
 public class AltairPlatform extends AbstractPlatform<AltairPbsComputeConfig> {
 
+    @Option(names = {"--work-dir"}, description = "Work directory.", required = true)
+    public String workDir;
+
     @Option(names = {"-u", "--user-name"}, description = "The username on the cluster used to launch the pipeline execution.")
     public String userName;
 

src/main/java/io/seqera/tower/cli/commands/computeenvs/platforms/AwsBatchForgePlatform.java

@@ -32,6 +32,9 @@
 
 public class AwsBatchForgePlatform extends AbstractPlatform<AwsBatchConfig> {
 
+    @Option(names = {"--work-dir"}, description = "Work directory.", required = true)
+    public String workDir;
+
     @Option(names = {"-r", "--region"}, description = "AWS region.", required = true)
     public String region;
 

src/main/java/io/seqera/tower/cli/commands/computeenvs/platforms/AwsBatchManualPlatform.java

@@ -28,6 +28,9 @@
 
 public class AwsBatchManualPlatform extends AbstractPlatform<AwsBatchConfig> {
 
+    @Option(names = {"--work-dir"}, description = "Work directory.", required = true)
+    public String workDir;
+
     @Option(names = {"-r", "--region"}, description = "AWS region.", required = true)
     public String region;
 

src/main/java/io/seqera/tower/cli/commands/computeenvs/platforms/AzBatchForgePlatform.java

@@ -35,6 +35,9 @@
 
 public class AzBatchForgePlatform extends AbstractPlatform<AzBatchConfig> {
 
+    @Option(names = {"--work-dir"}, description = "Work directory.", required = true)
+    public String workDir;
+
     @Option(names = {"-l", "--location"}, description = "The Azure location where the workload will be deployed.", required = true)
     public String location;
 

src/main/java/io/seqera/tower/cli/commands/computeenvs/platforms/AzBatchManualPlatform.java

@@ -28,6 +28,9 @@
 
 public class AzBatchManualPlatform extends AbstractPlatform<AzBatchConfig> {
 
+    @Option(names = {"--work-dir"}, description = "Work directory.", required = true)
+    public String workDir;
+
     @Option(names = {"-l", "--location"}, description = "The Azure location where the workload will be deployed.", required = true)
     public String location;