pyproject.toml

[project]
name = "uhgv"
version = "2.0.0"
description = "Taxonomic classifier for the Unified Human Gut Virome Catalog"
readme = "README.md"
requires-python = ">=3.10"
license = "BSD-3-Clause-LBNL"
license-files = ["LICENSE"]
authors = [
  { name = "Stephen Nayfach" },
  { name = "Antonio Camargo" },
]
keywords = ["bioinformatics", "genomics", "metagenomics", "viromics"]
classifiers = [
  "Intended Audience :: Science/Research",
  "Natural Language :: English",
  "Programming Language :: Python :: 3",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Topic :: Software Development :: Libraries",
]
dependencies = [
  "click>=8.4.1",
  "psutil>=7.2.2",
  "pyrodigal-gv>=0.3.1",
  "rich>=15.0.0",
  "rich-click>=1.9.8",
  "taxopy>=0.14.0",
]

[project.urls]
Homepage = "https://github.com/snayfach/UHGV-classify"

[project.scripts]
uhgv = "uhgv.cli:cli"

[build-system]
requires = ["uv_build>=0.11.17,<0.12.0"]
build-backend = "uv_build"

[tool.pixi.workspace]
channels = ["conda-forge", "bioconda"]
platforms = ["linux-64", "osx-arm64"]

[tool.pixi.pypi-dependencies]
uhgv = { path = ".", editable = true }

[tool.pixi.dependencies]
blast = ">=2.16,<3"
diamond = ">=2.2,<3"

[tool.ruff.lint]
extend-select = ["I"]