quality_control.md

Sequencing Quality Control

This module provides functionality for performing quality control on sequencing data.

Overview

The quality control process includes:

1. Calculating various QC metrics
2. Visualizing the distribution of read qualities

Main Functions

• calculate_qc_metrics(sequencing_data): Calculates quality control metrics for sequencing data.
• plot_quality_distribution(sequencing_data): Plots the distribution of read qualities.

Usage

from src.quality_control.quality_control import main

main('path/to/your/sequencing_data.csv')

This will calculate QC metrics and generate a plot of the quality score distribution.