spatial_transcriptomics.md

Spatial Transcriptomics Analysis

This module provides functionality for analyzing spatial transcriptomics data.

Overview

The spatial transcriptomics analysis includes:

1. Data loading and preprocessing
2. Normalization and feature selection
3. Dimensionality reduction and clustering
4. Spatial analysis
5. Visualization

Main Functions

• process_spatial_data(adata): Processes spatial transcriptomics data.
• spatial_analysis(adata): Performs spatial analysis on the processed data.
• visualize_results(adata): Visualizes the results of the analysis.

Usage

from src.spatial_transcriptomics.spatial_transcriptomics import main

main('path/to/your/visium/data')

This will process the spatial transcriptomics data, perform spatial analysis, and generate visualizations.