[Microreact] Fix missing encode parameter (#44)

* pass missing logger to encode in create_tree_entry

* adhere to new format

* remove from previous version

* more robust error handling

Author: awh082834

microreact_export/1.0.1/Dockerfile

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+FROM python:3.13-slim
+
+ARG PANDAS_VER="2.3.3"
+ARG REQUESTS_VER="2.32.5"
+
+LABEL description="Docker container for Microreact export script"
+LABEL website="https://github.com/theiagen_docker_builds/microreact_export"
+LABEL license="https://github.com/theiagen_docker_builds/blob/main/LICENSE"
+LABEL maintainer="Andrew Hale"
+LABEL maintainer.email="andrew.hale@theiagen.com"
+LABEL dockerfile.version="1.0.1"
+
+RUN apt-get update && apt-get install -y --no-install-recommends gcc\
+    && pip3 install --no-cache-dir \
+        pandas==${PANDAS_VER} \
+        requests==${REQUESTS_VER} \
+    && apt-get remove -y gcc \
+    && apt-get autoremove -y \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+
+WORKDIR /scripts
+
+COPY microreact_export.py /scripts/microreact_export.py
+
+ENTRYPOINT [ "python", "/scripts/microreact_export.py" ]

microreact_export/1.0.1/README.md

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+# Microreact_Export
+
+`microreact_export.py` creates, updates, and submits Microreact project files in JSON format.
+
+## Inputs
+
+- project_name: Desired name for Microreact project
+- project_url: Project ID for current project, used in conjunction with `--update`
+- update: Allows for a currently present Microreact project to be updated with new metadata or tree files, used in conjunction with `--project_url`
+- metadata_tsv: Input table to be used as Microreact metadata, command line useage only
+- tree_files: List of tree files for upload
+- selected_columns: Columns to be included in Microreact metadata
+- access_token: Access token available on Microreact account page for API access
+- restricted_access: Creates a private Microreact project (default: false)
+- remove_file_columns: Removes columns associated with cloud filepaths (default: false)
+- id_column: Column set to be the unique identifier for Microreact
+- date_column: If available, the column name associated with sample dates for Microreact Timeline usage