Update setup.md

Author: bpdurbin

setup.md

@@ -1,13 +1,13 @@
 In the RStudio console, cut and paste the following commands:
 
 ```
-download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/limma-proteomics-August-2024/master/legacy-report.pg_matrix.tsv", "./legacy-report.pg_matrix.tsv")
+download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/limma-proteomics-August-2025/master/legacy-report.pg_matrix.tsv", "./legacy-report.pg_matrix.tsv")
 ```
 
 ```
-download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/limma-proteomics-August-2024/master/Annotation_file_timsTOF.txt", "./Annotation_file_timsTOF.txt")
+download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/limma-proteomics-August-2025/master/Annotation_file_timsTOF.txt", "./Annotation_file_timsTOF.txt")
 ```
 
 ```
-download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/limma-proteomics-August-2024/master/limma_proteomics_tutorial_2024.Rmd", "./limma_proteomics_tutorial_2024.Rmd")
+download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/limma-proteomics-August-2024/master/limma_proteomics_tutorial_2024.Rmd", "./limma_proteomics_tutorial_2025.Rmd")
 ```