CI #739
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| name: CI | |
| on: | |
| # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming | |
| # The cookiecutter uses the "--initial-branch" flag when it runs git-init | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| # Weekly tests run on main by default: | |
| # Scheduled workflows run on the latest commit on the default or base branch. | |
| # (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
| - cron: "0 0 * * 0" | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # os: [macOS-latest, ubuntu-latest, windows-latest] | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - name: Get current date | |
| id: date | |
| run: echo "date=$(date +%Y-%m-%d)" >> "${GITHUB_OUTPUT}" | |
| - name: Setup Micromamba and install from environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.6-0' | |
| micromamba-binary-path: ~/.local/bin/micromamba | |
| environment-file: environment.yml | |
| environment-name: batter_dev | |
| cache-environment: true | |
| cache-downloads: true | |
| cache-environment-key: environment-${{ steps.date.outputs.date }} | |
| cache-downloads-key: downloads-${{ steps.date.outputs.date }} | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| init-shell: bash | |
| - name: Install deps from main environment file | |
| shell: bash -l {0} | |
| run: | | |
| micromamba run -n batter_dev pip install -e ./extern/alchemlyb | |
| micromamba run -n batter_dev pip install -e ./extern/rocklinc | |
| micromamba run -n batter_dev pip install -e . | |
| - name: List installed packages | |
| shell: bash -l {0} | |
| run: | | |
| micromamba list | |
| - name: Run tests | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| BATTER_TEST_RUN_CLI=1 pytest -v --cov=batter --cov-report=xml --color=yes tests/ | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |