Search results

Generate FASTA index files if not provided

Status: Open.

#43 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Jul 3, 2020

Validate input BAM file(s) prior SV calling

code

enhancement

Status: Open.

#42 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Apr 10, 2020

·  

1.2.0

Update SV callers to the latest versions

code

enhancement

Status: Open.

#35 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Feb 3, 2020

Test workflow with alternative JVMs

Status: Open.

#24 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Mar 5, 2019

Test if bcftools can replace delly filter

question

Status: Open.

#15 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Dec 6, 2018

Decouple SV post-processing from calling

code

enhancement

Status: Open.

#14 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Dec 6, 2018

LUMPY.vcf missing contig info in the header

bug

Status: Open.

#12 In GooglingTheCancerGenome/sv-callers;

· arnikz opened on Oct 24, 2018