SMD Bioinformatics Lund
Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund
Repositories
Showing 10 of 72 repositories
bonsai
Public
Visualize and analyze resistance and outbreak of bacterial pathogen
SMD-Bioinformatics-Lund/bonsai's past year of commit activity
Python
8
GPL-3.0
3
39
8
Updated Aug 11, 2026
SMD-Bioinformatics-Lund/SomaticPanelPipeline's past year of commit activity
virtitta
Public
Visualization of virus, designed to work with Virpipa
SMD-Bioinformatics-Lund/virtitta's past year of commit activity
Python
0
MPL-2.0
0
0
0
Updated Aug 11, 2026
coyote3
Public
Coyote3 is a secure, scalable, and extensible web application designed as a one-stop solution for genomic variant interpretation, data management, and clinical reporting. Built by the @SMD-Bioinformatics-Lund , Lund,
SMD-Bioinformatics-Lund/coyote3's past year of commit activity
cll_genie
Public
CLL Genie is a web application for managing LymphoTrack data, IMGT/V-QUEST analysis, IGHV mutation assessment, and clinical CLL reporting.
SMD-Bioinformatics-Lund/cll_genie's past year of commit activity
Python
1
0
4
0
Updated Aug 6, 2026
SMD-Bioinformatics-Lund/nextflow_tumwgs's past year of commit activity
Perl
2
2
16
0
Updated Aug 6, 2026
virpipa
Public
Virus assembly pipeline. First for HCV
SMD-Bioinformatics-Lund/virpipa's past year of commit activity
Nextflow
0
MPL-2.0
0
0
0
Updated Jul 31, 2026
SMD-Bioinformatics-Lund/Pelops's past year of commit activity
Python
0
4
0
0
Updated Jul 29, 2026
bonsai-sdk
Public
bonsai-libs is the shared Python library for the Bonsai platform. It provides common building blocks used by Bonsai services and tools.
SMD-Bioinformatics-Lund/bonsai-sdk's past year of commit activity
Python
1
GPL-3.0
0
0
2
Updated Jul 10, 2026
bonsai-prp
Public
Pipeline output Processing Program for Bonsai
SMD-Bioinformatics-Lund/bonsai-prp's past year of commit activity
Python
0
GPL-3.0
2
10
2
Updated Jul 9, 2026
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