Skip to content
Open
13 changes: 13 additions & 0 deletions workflows/microbiome/samestr-workflow/.dockstore.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,13 @@
version: 1.2
workflows:
- name: main
subclass: Galaxy
publish: true
primaryDescriptorPath: /Galaxy-Workflow-SameStr_Workflow.ga
testParameterFiles:
- /Galaxy-Workflow-SameStr_Workflow-tests.yml
authors:
- name: 'Xenia '
familyName: "Morera Mart\xEDnez"
- name: 'Saim '
familyName: Momin
5 changes: 5 additions & 0 deletions workflows/microbiome/samestr-workflow/CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
# Changelog

## [0.1] - 2026-06-18

First release.
Original file line number Diff line number Diff line change
@@ -0,0 +1,81 @@
- doc: Test outline for SameStr-Workflow
job:
Raw Reads:
class: Collection
collection_type: list:paired
elements:
- class: Collection
type: paired
identifier: 28C
elements:
- class: File
identifier: forward
galaxy_id: "26c75dcccb616ac82be854397f71b1c9"
- class: File
identifier: reverse
galaxy_id: "26c75dcccb616ac8e428a378a8fe9c34"
Comment thread
xens25 marked this conversation as resolved.
Outdated
- class: Collection
type: paired
identifier: 28B
elements:
- class: File
identifier: forward
galaxy_id: "26c75dcccb616ac8fb1de12482e3da71"
- class: File
identifier: reverse
galaxy_id: "26c75dcccb616ac8bf67f112ed1e99a0"
- class: Collection
type: paired
identifier: 28A
elements:
- class: File
identifier: forward
galaxy_id: "26c75dcccb616ac83af14439b6619568"
- class: File
identifier: reverse
galaxy_id: "26c75dcccb616ac83b3c1acd5116120b"
Run mOTUs: false
Run MetaPhlAn: true
outputs:
stats_file_metaphlan:
element_tests:
t__SGB15299:
asserts:
has_text:
Comment thread
xens25 marked this conversation as resolved.
Outdated
text: "28B"
t__SGB4285:
asserts:
has_text:
text: "28B"
t__SGB6362:
asserts:
has_text:
text: "28B"
taxon_counts_metaphlan:
asserts:
has_text:
text: "28A"
has_text:
text: "28B"
has_text:
text: "28C"
strain_events_metaphlan:
asserts:
has_text:
text: "t__SGB15299"
has_text:
text: "t__SGB4285"
has_text:
text: "t__SGB6362"
has_text:
text: "28B"
has_text:
text: "28C"
cooccurrences_metaphlan:
asserts:
has_text:
text: "28A"
has_text:
text: "28B"
has_text:
text: "28C"
Loading
Loading