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Run GPU nf-tests on: pull_request

nf-test-changes

GPU Test | g4dn.xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

GPU Test | g4dn.2xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

confirm-pass-gpu

labeler on: pull_request

Label the PR size

Run when nf-test tests are skipped on: pull_request

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confirm-pass-nf-test

Run when nf-test-gpu tests are skipped on: pull_request

check-files

confirm-pass-gpu

Run Linting on: pull_request 2

pre-commit

nf-core-changes

nf-core lint modules (custom/orfcollapse)

nf-core lint modules (custom/orfmerge)

nf-core lint modules (deepmased/features)

nf-core lint modules (deepmased/predict)

nf-core lint modules (freebayes)

nf-core lint modules (gatk4/cleansam)

nf-core lint modules (leafcutter/clusterregtools)

nf-core lint modules (leviosam2/lift)

nf-core lint modules (ngsbits/bedannotategc)

nf-core lint modules (ngsbits/bedcoverage)

nf-core lint modules (ngsbits/rohhunter)

nf-core lint modules (ngsbits/samplegender)

nf-core lint modules (ngsbits/updhunter)

nf-core lint modules (pypolca/run)

nf-core lint modules (qcatch)

nf-core lint modules (trtools/mergestr)

nf-core lint modules (ultra/align)

nf-core lint modules (ultra/index)

nf-core lint modules (ultra/pipeline)

nf-core lint modules (umitools/group)

nf-core lint modules (unzip)

nf-core lint modules (unzipfiles)

nf-core lint modules (vizgenpostprocessing/compiletilesegmentation)

nf-core lint modules (vizgenpostprocessing/preparesegmentation)

nf-core lint modules (vizgenpostprocessing/runsegmentationontile)

nf-core lint modules (wgsim)

nf-core lint modules (xengsort/index)

nf-core lint modules (xeniumranger/import-segmentation)

nf-core lint subworkflows (archive_extract)

nf-core lint subworkflows (homer_groseq)

nf-core lint subworkflows (orftable_fasta_gtf_buildorfcatalogue)

nf-core lint subworkflows (tiff_segmentation_vpt)

nf-core lint subworkflows (vcf_annotate_ensemblvep_snpeff)

confirm-pass-lint

Run nf-test on: pull_request 19

nf-test-changes

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confirm-pass-nf-test

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