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Update nextflow_schema.json with improved parameter configuration - #20

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evanfloden wants to merge 1 commit into
seqeralabs:mainfrom
evanfloden:update-schema
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Update nextflow_schema.json with improved parameter configuration#20
evanfloden wants to merge 1 commit into
seqeralabs:mainfrom
evanfloden:update-schema

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  • Enhanced parameter descriptions and help text
  • Updated parameter categories and grouping
  • Improved default values and validation rules
  • Added missing parameter definitions

🤖 Generated with Claude Code

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

- Enhanced parameter descriptions and help text
- Updated parameter categories and grouping
- Improved default values and validation rules
- Added missing parameter definitions

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
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