Clinical Virology Unit
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Repositories
- Metatropics Public
The metatropics pipeline is a Nextflow-driven workflow designed for viral identification and the creation of consensus genomes from nanopore (metagenomic) sequencing data.
- virasign Public Forked from DaanJansen94/virasign
Virasign is a viral taxonomic classification tool designed for nanopore sequencing data.
- RecMpox Public Forked from DaanJansen94/RecMpox
RecMpox flags potential recombination events in monkeypox virus genomes.
- ebolaseq Public Forked from DaanJansen94/ebolaseq
EbolaSeq: A command-line tool for analyzing Ebola virus sequences. It automates sequence retrieval from NCBI GenBank, processing, alignment, and phylogenetic tree generation.
- polyat Public Forked from DaanJansen94/polyat
polyat: A command-line tool for detecting polyA/T homopolymers in sequencing reads.
- Lassensus Public Forked from DaanJansen94/lassensus
A tool for Lassa virus consensus sequence generation from long-read sequencing data.
- LassaSeq Public Forked from DaanJansen94/LassaSeq
LassaSeq: A command-line tool for analyzing Lassa virus sequences. It automates sequence retrieval from NCBI GenBank, processing, alignment and phylogenetic tree generation, with special handling for Lassa's bi-segmented genome.
- viralrecon Public Forked from DaanJansen94/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
- a3partitioner Public Forked from DaanJansen94/a3partitioner
A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions from sequence alignments.
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