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@Clinical-Virology-Unit Clinical Virology Unit

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    10 repositories

    • metatropics-epi2me

      Public
      EPI2ME Desktop version of Metatropics
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Aug 5, 2026Aug 5, 2026

    • Metatropics

      Public
      The metatropics pipeline is a Nextflow-driven workflow designed for viral identification and the creation of consensus genomes from nanopore (metagenomic) seque…
      Nextflow
      •
      MIT License
      •1•2•0•0•Updated Aug 5, 2026Aug 5, 2026

    • virasign

      Public
      Virasign is a viral taxonomic classification tool designed for nanopore sequencing data.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 16, 2026Jul 16, 2026

    • RecMpox

      Public
      RecMpox flags potential recombination events in monkeypox virus genomes.
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 16, 2026Jul 16, 2026

    • ebolaseq

      Public
      EbolaSeq: A command-line tool for analyzing Ebola virus sequences. It automates sequence retrieval from NCBI GenBank, processing, alignment, and phylogenetic tr…
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 16, 2026Jul 16, 2026

    • polyat

      Public
      polyat: A command-line tool for detecting polyA/T homopolymers in sequencing reads.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • Lassensus

      Public
      A tool for Lassa virus consensus sequence generation from long-read sequencing data.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • LassaSeq

      Public
      LassaSeq: A command-line tool for analyzing Lassa virus sequences. It automates sequence retrieval from NCBI GenBank, processing, alignment and phylogenetic tre…
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • viralrecon

      Public
      Assembly and intrahost/low-frequency variant calling for viral samples
      Nextflow
      •
      MIT License
      •156•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • a3partitioner

      Public
      A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions from sequence alignments.
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 4, 2025Mar 4, 2025
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