Add Galaxy tutorial for breast cancer spatial transcriptomics analysis from Galaxy-EISTA - #7025

Draft

khaled196 wants to merge 25 commits into

galaxyproject:mainfrom

bioinfbrad:eista

Commits on Jun 25, 2026

Create spatial-brest-cancer-tme-EISTA tutorial
khaled196
committed
3ed4429

Commits on Jul 6, 2026

Merge branch 'galaxyproject:main' into eista
khaled196
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ac2a16a
add the usecase to the tutirual needs quistions and testing
khaled196
committed
43df93e

Commits on Jul 30, 2026

Merge branch 'galaxyproject:main' into eista
khaled196
authored
2589008

Commits on Aug 4, 2026

add spatial tutorial
khaled196
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f2b3d79
remove spatial from imaging
khaled196
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7f73cf4
Update topics/single-cell/tutorials/spatial-breast-cancer-tme-EISTA/tutorial.md

khaled196
and
github-actions[bot]
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0eadb15
Add spatial transcriptomics workflow test
khaled196
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0e73d3f
Update topics/single-cell/tutorials/spatial-breast-cancer-tme-EISTA/tutorial.md

khaled196
and
nilchia
authored
c5dc266
Update topics/single-cell/tutorials/spatial-breast-cancer-tme-EISTA/tutorial.md

khaled196
and
nilchia
authored
9fc5547
remove test data and use zenodo and adress Amir comments
khaled196
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ac10818
add images
khaled196
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8164ba1
remove introduction header
khaled196
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8a1f13b
change file names
khaled196
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ab635af
Merge branch 'main' into eista
khaled196
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609ef97
update file name
khaled196
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d2dc863

Commits on Aug 5, 2026

fix the name
khaled196
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eb13d97

Commits on Aug 6, 2026

validate the tutorial manualy and update outptus
khaled196
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6668211
Remove image with newline in filename
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8bda7dd
update time 3h is enugh
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2f77497
fix quistions hvg
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ab761d1
remove preserve the x as to counts
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354000d
cleaner table
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37eb3db
cleaner table
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I will fix the rest later
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ec81d7c